PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10005313
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 220aa    MW: 25214.3 Da    PI: 7.845
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10005313genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.21.2e-4271061100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +CaaCk+lrrkC+++C++apyfp +qp+kfa vhk+FGasnv kllk+l+  +reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+ql+++l+l++
  Lus10005313   7 PCAACKFLRRKCTQECIFAPYFPPDQPQKFASVHKVFGASNVAKLLKELSAVQREDAVNSLAYEAEERLRDPVYGCVGLISILQHRLKQLHHDLELAR 104
                  7**********************************************************************************************998 PP

       DUF260  99 ee 100
                  +e
  Lus10005313 105 RE 106
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6066107IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-427104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MMSSNSPCAA CKFLRRKCTQ ECIFAPYFPP DQPQKFASVH KVFGASNVAK LLKELSAVQR  60
EDAVNSLAYE AEERLRDPVY GCVGLISILQ HRLKQLHHDL ELARRELANY IGAPMPHQQQ  120
QYQNYPSYPN HNQQEVRFNG GGLGGNYEIT RNYINYEQIQ SRNNAEAAQV FFQTRQQEGE  180
TGHFDYNRKM LRRRTAAAGD QEEDREVEVD RGLLMRPTC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039214.12e-68PREDICTED: LOB domain-containing protein 36 isoform X1
RefseqXP_011039215.12e-68PREDICTED: LOB domain-containing protein 36 isoform X1
RefseqXP_011039216.12e-68PREDICTED: LOB domain-containing protein 36 isoform X2
SwissprotQ9FKZ34e-67LBD36_ARATH; LOB domain-containing protein 36
TrEMBLB9HE744e-68B9HE74_POPTR; Uncharacterized protein
STRINGPOPTR_0007s11460.11e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23533484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.13e-67ASYMMETRIC LEAVES 2-like 1